David Sigfredo Angulo                                       8014 Kedvale

                                                                                                        Skokie, IL. 60076

                                                                                                           (708) 558-0206

                                                                                                           dangulo@AnguloConsulting.com

                                                                                                           http://AnguloConsulting.com

Overview:  Superlative level manager, developer, educator, and researcher that has spent a career identifying and becoming an expert in the nascent technologies that ultimately become the foremost technologies and in developing and utilizing exceptional management and communication skills.  Areas of specialization include grid, distributed, parallel, and high performance computing, biomedical informatics, object oriented technology, internet programming, test driven development, software architecture, XML, JUnit, ANT, and Agile Development.

Education

1970-1974

Attended Lake Central HS.  Graduated third in class.  SAT scores in 99+ percentile

 

1973-1974.

Attended Purdue and Valparaiso Universities while in high school.

 

1974-1975.

Attended California Institute of Technology.

 

1976-1979

1994-1998

Attended Loyola of Chicago.  Obtained MS in Computer Science.
Received the Robert B. Reisel award for outstanding academic achievement

 

2004-

Attended DePaul University as a PhD student in Computer Science

Race       Hispanic

Experience

DePaul University                               Instructor                             January 2003 to Present

Best of conference poster at SuperComputing 2004.  Leading member of team that won the SuperComputing 2002 Grand Challenge Award.  Taught undergraduate and graduate courses.  Helped investigate how best to start up a Research Institute. Chaired the Colloquium Committee. Led the process to start a Bioinformatics major.

University of Chicago         Sr. Research Systems Analyst & Graduate Instructor               July 2000 to Nov 2002
and Argonne National Labs

Developed and taught graduate level courses in XML and Web Services (new courses for the University). Lead several research projects in high performance distributed grid computing (Globus) using Java, C++, and C in heterogeneous Unix environments.  Researched adaptive techniques to maintain high performance in a changing environment (resources coming on and off line, changing load characteristics, etc.).  Elected Co-Chair of the Life Sciences Grid Research Group in the GGF.  Member of the Globus project which won the prestigious R&D 100 award. 

Loyola University                                Visiting Professor                              January 1998 to September 2001

Taught several different courses as a full time, non-tenure track faculty member.  Courses included both graduate and undergraduate OO with Java and C++, both graduate and undergraduate Visual Basic, several introductory classes with Java and Visual Basic, Web Design, and CGI/Web programming with Perl, Java Scripts, and Java Servlets.  Was the class coordinator for introductory Visual Basic.  Developed two new courses for the department (CGI/Web programming and Client/Server Web Programming).  Developed three courses for Web based remote learning (CGI/Web programming, Client/Server Web Programming, and Object Oriented Programming).

SPSS                                     Master Software Engineer                May 1993 to January 1998

Became first of the new employees to lead the company in Object Oriented Programming.  Led a team developing OLE Automation for ActiveX objects. Wrote an Object Oriented parsing system. Wrote several GUI systems.  Languages: C++, Java, VB Hardware: PC (Win 95, NT) Technologies ActiveX, COM, OLE Automation, STL, MFC, OO Design Patterns, Booch Object Design, Visual Basic OLE Scripting,

SSA                                        Sr. Software Engineer                        November 1991 to May 1993

Led team development of a client/server (PC Windows/AS-400) case tool. The code generation facility was an interpreter using PC/YACC and generated C++ code.  Led a team implementing applications using this case tool. Languages: C++ Hardware: PC (Windows, OS/2) DBMS: MS SQL, QELIB.

Datalogics                             SQA Librarian                                    October 1988 to November 1991

Identified and collected code of potential generic use, modifying code to make it generic, and documenting and advertising the resulting library. This resulted an in-house OO library. Was the resource expert for all OO technology.  Developed an in-house CASE tool for use with a relational DB.  Designed and wrote a generic text DB app. Left a year after project was canceled for downsizing. Languages: C++, C, SmallTalk, and Prolog. Hardware: VAX, PC (DOS). DBMS: Rdb, Oracle.

SIR/ISI                                  Sr. Technical staff                              December 1986 to August 1988.

Responsible for development of SIR DBMS, SIR 4GL programming language, and SIR AI products on a VAX.  Also ported product to DG machines.  Left when the firm went bankrupt. Languages: FORTRAN, DG assembler, C. Hardware: DG, VAX, PC (DOS), SUN (UNIX). DBMS: SIR, Oracle, Ingress.

Angulo Consulting             President.                                             1985 to present.

Worked for a variety of clients including tuning a McDonnell-Douglas CAD-CAM system and writing CAD-CAM macros to interface to the OS, doing cabling, financial applications. web programming, OO programming, XML, VoXML, and WML.

Orleans Co                           DP manager.                                        October 1984 to October 1985.

In charge of all communications, hardware, software development, trouble shooting, operations, and DP expenditures.  Developed specifications for a manufacturing/inventory/shipping application.  Left when the plant was closed. Languages: COBOL Hardware: DG. DBMS: INFOS, DBMS (a networked manager).

Lerner Newspapers            Programmer/Analyst.                        June 1980 to October 1984.

In charge of A/R, A/P, G/L, Circulation, and billing projects (from feasibility studies to implementation).  Helped develop a proprietary DBMS.  Wrote a communications program and a precompiler to be used with the DBMS. Languages: DG/L and DG assembler. Hardware: DG. DBMS: In-house, INFOS.

Chicago Tribune Programmer.                                       February 1979 to June 1980.

In charge of Editorial on-line system.  Wrote a CPU-to-CPU communications program. Languages: SAIL (an ALGOL derivative), Macro-10 assembly, PDP-11 assembly, 8080 assembly, and COBOL. Hardware: DEC system-10, 8080, and PDP-11.

Diversity

  • Organized and ran the diversity workshop in the NSF retreat for REU PIs in October of 2005
  • Organized and ran the Internships Workshop for Latino students at the Illinois Latino Council on Higher Education (ILaCHE) in May of 2006
  • Member of the DePaul President’s Diversity Council subcommittee on Communications  
  • Member of DePaul’s El Salvador Project. 
  • Organizing a DePaul Hispanic Faculty and Staff organization.
  • Member of Illinois Latino Council on Higher Education (ILaCHE) for 2005, 2006, and 2007.
  • Ran an NSF REU Site (Research Experience for Undergraduates) which had participation of 37% minority students.  Funded by NSF for $260,343
  • Published over a dozen papers and posters with minority and women students.
  • Mentored CTI students in the McNair Fellowship
  • Mentored three women and minority students in the DePaul URAP program.
  • Member of the CTI Diversity Committee 2006-07, 2007-08
  • Member of Hispanic and Latino Organization at the Argonne National Laboratory.

 

Publications, Talks, Grants, and Program Committees

Journal Editor

Guest Editor for the ACM Crossroads Journal Special Issue on Bioinformatics 13-1, Fall 2006

 

International Journals and Conferences: Publications and InvitedTalks

Laurie Parker, Aaron Engel-Hall, Kevin Drew, George Steinhardt, Donald L. Helseth Jr, David Jabon, Timothy McMurry, David Sigfredo Angulo, Stephen J. Kron, "Investigating quantitation of phosphorylation using MALDI-TOF mass spectrometry." Journal of Mass Spectrometry. Volume 42 , Issue 12 (December 2007) pp. 1076.Angulo, David and Farazdel, Abbas.  The Future of Life Sciences Applications on Grids. Global Grid Forum 17, Tokyo, Japan.  May, 2006

Kolbrun Kristjiansdottir, Donald Wolfgeher, Donald L. Helseth Jr., Nick Lucius, David Sigfredo Angulo and Stephen J. Kron. "Phosphoprotein profiling: Cell cycle regulated phosphoproteins and complexes in yeast. American Association for Cancer Research Special Conference: Advances in Proteomics in Cancer Research, Amelia Island, Florida, February 27 - March 2, 2007

Angulo, David and Farazdel, Abbas.  LS Grids.  Open Grid Forum 20, Manchester, England, July  2007

Angulo, David and Farazdel, Abbas.  LSG-RG Future Directions.  Open Grid Forum 21, Seattle, October 2007.

Angulo, David.  Pharma in LSGrid  Boston, February, 2008

Angulo, David and Farazdel, Abbas. LSG-RG Future Directions.  Global Grid Forum 10, Tokyo, Japan, February 2007

Dominic Battré, David Sigfredo Angulo, “MPI Framework for Parallel Searching in Large Biological Databases,” J. Parallel Distrib.Comput. (2006), doi: 10.1016/j.jpdc.2006.08.003

Angulo, David.  LSGrid-2007.  Third International Symposium of Life Science Grid 2006, Tokyo, Japan, November 12-13, 2006

Angulo, David Sigfredo. "The Bioinformatics Revolution," J. ACM Crossroads 13-1. Fall 2006.

Angulo, David Sigfredo. "Challenges in Systems Biology: An Interview with Dr. Lee Hood, Inventor of the DNA Sequencer," J. ACM Crossroads 13-1. Fall 2006.

Angulo, David and Farazdel, Abbas.  The Future of Life Sciences Applications on Grids.  Global Grid Forum 17, Tokyo, Japan.  May, 2006

Angulo, David and Farazdel, Abbas. LS Grids.  Global Grid Forum 18, Washington, DC, September, 2006

Angulo, David and Farazdel, Abbas.  Life Sciences Applications on Grids Global Grid Forum 11, Honolulu, Hawaii, June, 2004

Angulo, David and Farazdel, Abbas.  Healthcare and Life Sciences Applications on Grids. Global Grid Forum 12, Brussels, Belgium, September, 2004

Angulo, David and Farazdel, Abbas.  HealthGrids.  Global Grid Forum 13, Seoul, S. Korea, March, 2005

Angulo, David and Farazdel, Abbas.  Healthcare Security and Privacy. Global Grid Forum 14, Chicago, June, 2005

Angulo, David and Farazdel, Abbas.  Security and Privacy Needs of Health Grids. Global Grid Forum 15, Boston, October 2005

Angulo, David and Farazdel, Abbas.  HealthGrids Global Grid Forum 16, Athens, February2006

Puryear, Eric; Angulo, David; Drew, Kevin; Schilling, Alex; von Laszewski, Gregor. Developing a Distributed and Scalable Foundation for Mass Spectrometry Data. 19th annual National Conference on Undergraduate Research. Lexington, VA April 21-23, 2005.

Puryear, Eric; Angulo, David; Drew, Kevin; Schilling, Alex; von Laszewski, Gregor.  Mass Spectrometry in the Illinois BioGrid (Poster).  19th annual National Conference on Undergraduate Research. Lexington, VA April 21-23, 2005.

Angulo, David. Mass Spectrometry in the Illinois BioGrid (Demonstration). SC2004 Conference, Pittsburgh, PA.  Nov. 6-12, 2004.

von Laszewski, Gregor; Amin, Kaizar; Bone, Matt; Hategan, Mike; Sahasrabudhe, Pankaj; Sosonkin, Mike; Winch, Robert; Vijayakumar, Nithya; Angulo, David. Building Grid Workflows from Legacy Applications.  Proceedings of SC2004 Conference, Pittsburgh, PA.  Nov. 6-12, 2004.

·       Awarded Best of Conference Poster – 109 high quality peer-reviewed accepted posters

Angulo, David; Schilling, Alex; Drew, Kevin; Freeman, Tim.  Mass Spectra Analysis on the Illinois BioGrid.  Proceedings of NETTAB 2004 (Network Tools and Applications in Biology) Conference, Camerino, Italy.  September 5-7, 2004.

Colubri, Andrés; Raddatz, Jessica Lyn; Angulo, David.  AIfold: A Statistical Potential for Protein Folding.  Proceedings of the 12th International Conference on Intelligent Systems for Molecular Biology and 3rd European Conference on Computational Biology (ISMB/ECCB).  Glasgow, Scotland, UK. July 31 - August 4, 2004.

Holly Dail, Otto Sievert, Fran Berman, Henri Casanova, Asim YarKhan, Sathish Vadhiyar, Jack Dongarra, Chuang Liu, Lingyun Yang, Dave Angulo, and Ian Foster.  Scheduling in the Grid Application Development Software Project.    (Book Chapter) in Grid Resource Management: start of the Art and Future Trends.  Nabrzyski, et. al. ed.  Boston: Kluwar, 2003.

Dave Angulo. Utilizing the XML DOM in C for Grid Applications.   Invited Featured Speaker at the 2003 International WebServices/XML Conference & Expo, Toronto.

GridLab: Enabling Applications on the Grid.  Gabrielle Allen, Dave Angulo, Tom Goodale, Thilo Kielmann, André Merzky, Jarek Nabrzysky, Juliusz Pukacki, Michael Russell, Thomas Radke, Edward Seidel, John Shalf, Ian Taylor.  Grid Computing - GRID 2002, Third International Workshop, Baltimore 39-45

Toward a Framework for Preparing and Executing Adaptive Grid Programs. Ken Kennedy, Mark Mazina, John Mellor-Crummey, Keith Cooper, Linda Torczon, Fran Berman, Andrew Chien, Holly Dail, Otto Sievert, Dave Angulo, Ian Foster, Dennis Gannon, Lennart Johnsson, Carl Kesselman, Ruth Aydt, Daniel Reed, Jack Dongarra, Sathish Vadhiyar, and Rich Wolski. April 2002, Proceedings of NSF Next Generation Systems Program Workshop (International Parallel and Distributed Processing Symposium 2002), Fort Lauderdale, FL.

Design and Evaluation of a Resource Selection Framework for Grid Applications.  HPDC-11, the Symposium on High Performance Distributed Computing, July 2002, Edinburgh, Scotland

Grid Computing & Web Services: A Natural Partnership.  Invited talk at the Poznan Supercomputing Center, Poznan, Poland, February, 2002.

The Anatomy of the Grid: Enabling Scalable Virtual Organizations.  Invited talk at the 2nd US-Hungarian Grid Workshop, Budapest, Hungary, February, 2002.

Grid Computing & Web Services: OGSA for GridLab.  Invited talk at the GridLab Workshop, Poznan, Poland, February, 2002.

Adaptive Grid Computing: Detecting and Adjusting for Dynamic Grid Conditions.  Invited Demonstration and Talk given at Supercomputing 2001 conference.  November 2001.

Nomadic Grid Applications: The Cactus WORM.  Invited talk at the High Performance Distributed Computing conference and Globus Retreat, August 2001

The Cactus Worm: Experiments with Dynamic Resource Discovery and Allocation in a Grid Environment.  International Journal of High-Performance Computing Applications.  Volume 15, Number 4.  2001

 

Local Conference Publications

Puryear, Eric; Van Puymbrouck, Jennifer; Angulo, David Sigfredo; Drew, Kevin; Hollenbeck, Lee Ann; Battre, Dominic; Schilling, Alex; Jabon, David; von Laszewski, Gregor.  "Achieving I/O Improvements in a Mass Spectral Database."  ACM Crossroads Volume 13 ,  Issue 2 (December 2006) p. 11Kwak, Gil; Helseth, L. Donald Jr.; Schilling, Alex; Angulo, David Sigfredo.  Hypothetical Sequence Analyzer (Poster).  BioMedical Informatics Workshop. Chicago, IL. October 13, 2006.

Rob Vogelbacher, Benjamin Capraro, Tobin Sosnick, Shohei Koide, David Sigfredo Angulo, IBG GeneDesigner: DNA Sequence Optimization for Designed Proteins BioMedical Informatics Workshop. Chicago, IL. October 13, 2006

  • Awarded Best of Conference Bioinformatics Poster

Kwak, Gil; Helseth, L. Donald Jr.; Schilling, Alex; Angulo, David Sigfredo.  Hypothetical Sequence Analyzer (Poster). BioMedical Informatics Workshop. Chicago, IL. October 13, 2006.

Donald L. Helseth, Jr., Laurie Parker, Kolbrun Kristjánsdóttir, Kevin Drew, Don Wolfgeher, Alex Schilling and David Sigfredo Angulo.  Developing Post-Translational Modification MS Tools (Poster). Chicago Biomedical Consortium 4th Annual Symposium, "Infrastructures for Systems Biology". Chicago, IL. September 29, 2006.

Rob Vogelbacher, Benjamin R. Carpraro, David Sigfredo Angulo, Tobin Sosnick, Shohei Koide.  IBG GeneDesigner: DNA Sequence Optimization for Designed Proteins (Poster).  Chicago Biomedical Consortium 4th Annual Symposium, "Infrastructures for Systems Biology". Chicago, IL. September 29, 2006.

David Sigfredo Angulo, Bryan Beaumont, David Kendall, Jonathan Gemmell, Michael Boyle, Gregory Zivich, Patrick Smyth, Frantz Gabeau, Anthony Jackson.  Pelagic: A Bioinformatics Architecture in R (Poster).  Chicago Biomedical Consortium 4th Annual Symposium, "Infrastructures for Systems Biology". Chicago, IL. September 29, 2006.

Gil D. Kwak , Larry L. Helseth Jr., Alexander B. Schilling, and David Sigfredo Angulo.  Hypothetical Sequence Analyzer (Poster). Chicago Biomedical Consortium 4th Annual Symposium, "Infrastructures for Systems Biology". Chicago, IL. September 29, 2006.

Laurie Parker, Aaron Engel-Hall, Kevin Drew, George Steinhardt, Donald L. Helseth, Jr., David Sigfredo Angulo, Alex Schilling and Stephen J. Kron, Quantifying peptide phosphorylation using MALDI-TOF mass spectrometry, Chicago Biomedical Consortium 4th Annual Symposium, "Infrastructures for Systems Biology". Chicago, IL. September 29, 2006.

Jackson ; Angulo, David.  The Design of an Analog Computer to Simulate Protein Folding (Poster).  Proceedings of the Midwest Software Engineering Conference/DePaul CTI Research Symposium. Chicago, IL. April 29 2006.

Gemmell, Jonathan; Kohn, Stephen; Angulo, David; Sosnick, Tobin; Freed, Karl; Jha, Abhishek; DeBartolo, Joseph. The Illinois Bio-Grid Protein Map (Poster). Proceedings of the Midwest Software Engineering Conference/DePaul CTI Research Symposium. Chicago, IL. April 29 2006.

Harman, Dennis; Angulo, David; Drew, Kevin; Schilling, Alex. A Data Model for Annotating the Peaks of Mass Spectrum Data (Poster). Proceedings of the Midwest Software Engineering Conference/DePaul CTI Research Symposium. Chicago, IL. April 29 2006.

Kwak, Gil; Angulo, David; Shilling, Alexander. Hypothetical Sequence Analyzer (Poster). Proceedings of the Midwest Software Engineering Conference/DePaul CTI Research Symposium. Chicago, IL. April 29 2006.

·      Awarded Best of Conference Poster

Puryear, Eric; Angulo, David; Drew, Kevin; Schilling, Alex; von Laszewski, Gregor. Enhancing a Mass Spectrometry I/O Framework. Proceedings of the Midwest Software Engineering Conference/DePaul CTI Research Symposium. Chicago, IL. April 29 2006.

Puryear, Eric; Angulo, David; Drew, Kevin; Schilling, Alex; von Laszewski, Gregor. Comparing Mass Spectra (Poster). Proceedings of the Midwest Software Engineering Conference/DePaul CTI Research Symposium. Chicago, IL. April 29 2006.

Van Puymbrouck, Jennifer; Puryear, Eric; Angulo, David; Schilling,Alex; Drew, Kevin; Jabon,David; von Laszewski, Gregor. Mass Spectrometry Database Infrastructure and Data Import Module (Poster). Proceedings of the Midwest Software Engineering Conference/DePaul CTI Research Symposium. Chicago, IL. April 29 2006.

McElhaney, Renee; Angulo, David Sigfredo; Frank, Ed; Siwamutita, Paiboon; Stejerean, Cosmin. Developing MSLauncher as Analysis Tool (Poster). Midwest Software Engineering Conference/DePaul CTI Research Symposium. Chicago, IL. April 29 2006.

Ala Eldeen, Hussam; Angulo, David; Drew, Kevin; Battre, Dominic; Schilling, Alex; Puryear, Eric; Van Puymbrouck, Jennifer; Jabon, David; von Laszewski, Gregor. Implementing Spectral Similarity Algorithms for Protein Identification. Midwest Software Engineering Conference/DePaul CTI Research Symposium. Chicago, IL. April 29 2006.

Stejerean, Cosmin; Siwamutita, Paiboon; Frank, E. D.; Giometti, Carol S; Babnigg, Gyorgy; Angulo, David; Drew, Kevin; von Laszewski, Gregor. An End-to-End System for Organizing and Sharing Raw and Derived Mass Spectrometry Data. Proceedings of the 2006 DePaul CTI Research Symposium. April 2006.

Van Puymbrouck, Jennifer; Angulo, David; Drew, Kevin; Hollenbeck, Lee Ann; Battre, Dominic; Schilling, Alex; Jabon, David; von Laszewski, Gregor. A Batch Import Module for an Emprically Derived Mass Spectral Database. Proceedings of the Midwest Software Engineering Conference/DePaul CTI Research Symposium. Chicago, IL. April 29 2006.

Vogelbacher, Rob; Angulo, David; and Koide, Shohei. Sequence Optimization for Synthetic Genes Using a Genetic Algorithm. Proceedings of the Midwest Software Engineering Conference/DePaul CTI Research Symposium. Chicago, IL. April 29 2006.

Gemmell, Jonathan; Angulo, David; Sosnick, Tobin; Freed, Karl; Jha, Abhishek; Colubri, Andres; DeBartolo, Joseph; Kendall, David and von Laszewski, Gregor. Inverse Protein Folding of Ubiquitin on the Illinois Bio-Grid. Proceedings of the Midwest Software Engineering Conference/DePaul CTI Research Symposium. Chicago, IL. April 29 2006.

Angulo, David . Illinois Bio-Grid Talk at the DePaul Chapter of the UPE. February, 2005.

Puryear, Eric; Angulo, David; Drew, Kevin; Schilling, Alex; von Laszewski, Gregor. Mass Spectrometry in the Illinois BioGrid (Poster). Annual DePaul Science Showcase for Guidance Counselors. Chicago, IL December 10, 2004.

Gemmell, Jonathan; Angulo, David; Colubri, Andres; Sosnick, Tobin; Freed, Karl; Koide, Shohei; von Laszewski, Gregor.  Steering Monte-Carlo Protein Folding Simulations With Data From Nuclear Magnetic Resonance Experiments On The Illinois Bio-Grid.  (Poster) Proceedings of 2004 DePaul CTI Research Symposium.  November 2004.

De La Serna, Andres; von Laszewski, Gregor; Angulo, Dave; Schilling, Alex.  Illinois Bio Grid Mass Spectrum Proteomic Database. (Poster) Proceedings of 2004 DePaul CTI Research Symposium.  November 2004.

Puryear, Eric; Angulo, David; Drew, Kevin; Schilling, Alex; Von Laszewski, Gregor. Mass Spectrometry in the Illinois BioGrid. (Poster) Proceedings of 2004 DePaul Natural Sciences, Mathematics & Technology Showcase. November 2004

Angulo, David.  Graduate Research in the Illinois Bio-Grid.  Talk at the DePaul PhD Symposium.  November, 2004.

Angulo, David; Puryear, Eric.  Undergraduate Research in the Illinois Bio-Grid.  Talk at the DePaul Chapter of the ACM.  November, 2004.

Puryear, Eric; Angulo, David; Drew, Kevin; Schilling, Alex; von Laszewski, Gregor. Mass Spectrometry in the Illinois BioGrid. (Poster)  Proceedings of 2004 DePaul CTI Research Symposium. November 2004

Angulo, D. Illinois Bio-Grid. Talk given to CTI PhD Students,  October, 2004

Drew, Kevin; Angulo, David; Schilling, Alex; Freeman, Tim.  Mass Spectra Analysis on the Illinois BioGrid.  Proceedings of 2004 Midwest Software Engineering Conference, Chicago.  June 2003.

·      Awarded Best of Conference Student Poster (Kevin Drew Student)

Angulo, D. Illinois Bio-Grid. Talk given to CTI PhD Students,  October, 2003

Angulo, D. The Anatomy of the Grid and the Illinois Bio-Grid.  Talk given to CTI chapter of IEEE,  October, 2003

Angulo, D. The Illinois Bio-Grid.  Invited talk at the Bio Informatics Group (BIG), Chicago, October, 2003

Angulo, D.  Anatomy of the Grid and the Illinois Bio-Grid.  Invited talk at the Chicago Technology Park, Chicago, December, 2003.

Angulo, D. Grid Computing and the Illinois Bio-Grid.  Invited talk for the Technology Seminar Series in the Capital Computation Institute at Louisiana State University, December, 2003.

The Illinois BioGrid: A Prototype for Industry-Academe Collaboration. Adam Steele, David S. Angulo. Proceedings of 2003 Midwest Software Engineering Conference, Chicago.

An Open-Source implementation of the DOM XML Standard in C. David S. Angulo. Proceedings of 2003 Midwest Software Engineering Conference, Chicago

Computing the Smith-Waterman Algorithm on the Illinois Bio Grid (Poster). David S. Angulo, Nigel M. Parsad, Tom Goodale, Gabrielle Allen, Ed Seidel. Proceedings of 2003 Midwest Software Engineering Conference, Chicago.

Enhancing Dynamic Fluid Flow Analysis With Computational Grids (Poster). David S. Angulo, Adam Steele, Jeff Sickel. Proceedings of 2003 Midwest Software Engineering Conference, Chicago.

Intelligent Grid Migration (Poster), David S. Angulo, Scott Kuehn. Proceedings of 2003 Midwest Software Engineering Conference, Chicago.

Phylogenetics on the Illinois Bio-Grid (Poster). Adam Steele, David S. Angulo, Steve Finkelman. Proceedings of 2003 Midwest Software Engineering Conference, Chicago.

Set Extended ClassAds: Declarative Models for Performance Modeling, Resource Selection, and Mapping.  Invited talk given at the GrADS Workshop, Rice University, May, 2002.

Benefits of Cactus to GrADS.  Invited talk given at GrADS Workshop, Rice University, March, 2002.

Contracts, Resource Selection, Mapping, and Scheduling.  Invited talk at the GrADS Workshop at Rice University, July 2001

Editor and writer of the Chicago Area Digital Users Society newsletter from 1989 to 1994 (this publication won an award for outstanding quality).

Monthly article in FOCUS magazine (for Data General computers) 1987-1988.

Editor and writer of the Chicago Data General Users Group newsletter from 1980-86.

Rabbit IgG Sequencing.  Dave Angulo, Robert Good, Lee Hood.  CalTech Biology Annual Report. 1975.

 

Grants

Awarded NIH Grant as Co-Investigator for “MALDI-TOF for High Throughput Signal Transduction Inhibitor Screening”  under the NIH Roadmap for Medical Research, Grant R01 HG3864. $2.4M September 2005-August 2009.

Awarded NSF Grant as Principal Investigator for REU 353989 “REU Site for Grid Computing and Bioinformatics.”  $260,343 May 2004 – May 2007

Awarded $260,000 in computer equipment from University of Chicago, Biological Systems Division for use in projects in the Illinois Bio-Grid. November 2004

Awarded $500,000 in computer equipment from Pfizer Global Research and Development for use in projects in the Illinois Bio-Grid. June 2004

Awarded $403,100 in computer equipment from Pfizer Global Research and Development for use in projects in the Illinois Bio-Grid. April 2004

Awarded Grant from DePaul’s University Research Council Competitive Grant as Principal Investigator for “Protein Folding Problem: AI Engine”  Grant number 350629

Awarded Grant from the NCSA/Alliance as Principal Investigator for “GrADS BioInformatics” (Grant Num: ASC020033N) 2002.

Awarded Grant from the NCSA/Alliance as Principal Investigator for “Illinois Bio-Grid Workbench” (Grant Num: ASC040012) 2003 .

Conference and Journal Program Committee Memberships

Program committee co-chair Third International Symposium of Life Science Grid 2006, Tokyo, Japan, November 12-13, 2006

IEEE Transactions on NanoBioscience Program Committee, 2006.

IEEE International Conference on Computer-Based Medical Systems track on "Grids for Biomedicine and Bioinformatics” Program Committee, Salt Lake City, Utah.  June 22-23, 2006.

MSEC Program Committee, Chicago, April 29, 2006

Special Issue of Lecture Notes in Bioinformatics. Grid Computing in Life Science. Program Committee  June 2004.

EuroPar 2005, Program Committee.  Lisbon Portugal. August 30 – September 2, 2005.

International Workshop on Life Science Grid, held in conjunction with the 19th Annual Conference of JSAI. Program Commiteee.   Seoul S. Korea, May, 2005

IEEE International Conference on Computer-Based Medical Systems track on "Grids for Biomedicine and Bioinformatics.  Dublin, Ireland, June 23-24, 2005.

International Workshop on Life Science Grid, held in conjunction with the 18th Annual Conference of JSAI.  Kanazawa-city, Japan, May, 2004.

International Workshop on Grid Workflow held in conjunction with Global Grid Forum 10, Berlin, Germany.  March, 2004.

Co-Chair Life Science Grid Research Group Workshop at Global Grid Forum 7, Tokyo, Japan, January, 2003

Co-Chair Life Science Grid Research Group Workshop at Global Grid Forum 8, Seattle, Washington, June, 2003

Joint Workshop on Grid Workflow with Life Science Grid Research Group and Grid Computing Environment Systems Research Group at Global Grid Forum 9, Chicago, Illinois, October, 2003

Co-Chair Life Science Grid Research Group Workshop at Global Grid Forum 10, Berlin, Germany, March, 2004

Co-Chair Life Science Grid Research Group Workshop on Life Sciences Applications on Grid at Global Grid Forum 11, Honolulu, Hawaii, June, 2004

Co-Chair Life Science Grid Research Group Special Workshop on Healthcare and Life Sciences Applications on Grids at Global Grid Forum 12, Brussels, Belgium, September, 2004

Co-Chair Life Science Grid Research Group Special Workshop on HealthGrids at Global Grid Forum 13, Seoul, S. Korea, March, 2005

Co-Chair Life Science Grid Research Group Special Workshop on Healthcare Security and Privacy at Global Grid Forum 14, Chicago, June, 2005

Co-Chair Life Science Grid Research Group Special Workshop on Security and Privacy Needs of Health Grid at Global Grid Forum 15, Boston, October 2005

Co-Chair Life Science Grid Research Group meeting on HealthGrids at Global Grid Forum 16, Athens, February 2006

Co-Chair Life Science Grid Research Group meeting on The Future of Life Sciences Applications on Grids at Global Grid Forum 17, Tokyo, May 2006

 

Other External Service

NSF Review Panel, December 2007.

NSF Review Panel, November 2006.

NSF Review Panel, June 2006

NSF Review Panel, November, 2005

NSF Review Panel, April, 2005

Board of Directosr, Illinois Medical District BiTMap program. 2005-present.